Outputs each of the normalized datasets to the specified directory.
Usage
writeNormalizedDatasets(
nr,
jobdir,
includePairwiseComparisons = FALSE,
includeCvCol = FALSE,
includeAnovaP = FALSE,
normSuffix = "-normalized.txt",
rawdataName = "submitted_rawdata.txt"
)Arguments
- nr
Results object.
- jobdir
Path to output directory.
- includePairwiseComparisons
Include p-values for pairwise comparisons.
- includeCvCol
Include CV column in output.
- includeAnovaP
Include ANOVA p-value in output.
- normSuffix
String used to name output together with normalization names.
- rawdataName
Name of output raw data file.
Examples
data(example_summarized_experiment)
normObj <- getVerifiedNormalyzerObject("job_name", example_summarized_experiment)
#> Input data checked. All fields are valid.
#> Sample check: More than one sample group found
#> Sample replication check: All samples have replicates
#> RT annotation column found (5)
normResults <- normMethods(normObj)
normResultsWithEval <- analyzeNormalizations(normResults)
outputDir <- tempdir()
writeNormalizedDatasets(normResultsWithEval, outputDir)