Prepare SummarizedExperiment object for statistics data

Prepare SummarizedExperiment object for statistics data

Usage

setupRawContrastObject(dataPath, designPath, sampleColName)

Arguments

dataPath

Path to raw data matrix

designPath

Path to design matrix

sampleColName

Name for column in design matrix containing sample names

Value

experimentObj Prepared instance of SummarizedExperiment

Examples

data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv")
design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv")
sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")