OmicLoupe

Introduction

OmicLoupe is a software used for interactive exploration of omics-datasets. It provides an extensive set of visualizations designed to explore quality issues and biological and technical trends rapidly. It also provides visualizations aiming to make it easy to compare how gene products behave across multiple datasets.

It was developed at the Department of Immunotechnology by Jakob Willforss, with great input from Valentina Siino and Fredrik Levander.

Availability

The source code and local installation instructions are available on GitHub.

An OmicLoupe web server hosted at SciLifeLab is available. Test data can be downloaded from here.

Reference

A manuscript describing the software is published in BMC Bioinformatics here. Please cite if you use OmicLoupe in your work:

Willforss, J., Siino, V. & Levander, F. OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons. BMC Bioinformatics 22, 107 (2021). https://doi.org/10.1186/s12859-021-04043-5

Contact

If you run into issues or have questions, feel free to contact us: jakob (at) jakobwillforss (dot) com or fredrik (dot) levander (at) immun (dot) lth (dot) se.

Tutorial Videos

Video tutorials are available on YouTube.